species:   Scscl
pid:       PID1647
parent:    Ssc-milR-123
paralog:   
locus:     NW_001820826.1:1280326-1280411
matures:   ['UCGAGGGUCAUUCGGGUUCGG', 'GUACAAAAGUAGCUUCGGGC']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820826.1:1280326-1280411

10 out of bounds
27 alignments
9 proper strand
8 stranded perfect matches

        **********************                           *********************        
CUUCAAACGCUCGAGGGUCAUUCGGGUUCGGUUUGGUCAGUUGCCUUCUCACCAGAUGGUACAAAAGUAGCUUCGGGCUCUUACGA
........((((((((.(.(((...((.(.(((((((.((.......)).))))))).).))...)))).))))))))........
----------UCGAGGGUCAUUCGGGUUCGG------------------------------------------------------- l=21 a=0 c
----------------------------------------------------------GUACAAAAGUAGCUUCGGGC-------- l=20 a=0 c*
----------UCGAGGGUCAUUCGGGUUCG-------------------------------------------------------- l=20 a=1 ma
-----------------------------------------------------------UACAAAAGUAGCUUCGGGC-------- l=19 a=0 ma*

----------UCGAGGGUCAUUCGGGUUCG-------------------------------------------------------- l=20 a=1 (ma)
-----------CGAGGGUCAUUCGGGUUCGGUU----------------------------------------------------- l=22 a=1 
------------GAGGGUCAUUCGGGUUCGGUUUG--------------------------------------------------- l=23 a=1 
-------------AGGGUCAUUCGGGUUCGGUUUa--------------------------------------------------- l=22 a=1 
----------------GUCAUUCGGGUUCGGUUU---------------------------------------------------- l=18 a=1 
----------------GUCAUUCGGGUUCGGUUUGGUCA----------------------------------------------- l=23 a=1 
--------------------------------------------------------UGGUACAAAAGUAGCUUCGGG--------- l=21 a=1 
--------------------------------------------------------UGGUACAAAAGUAGCUUCGGGC-------- l=22 a=1 
-----------------------------------------------------------UACAAAAGUAGCUUCGGGCUCU----- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-110110001100
fn-001
